on CLC4.7 -> NCBi


started about 10:30am July 12
12:44 ~50% done
3pm done

Multi BLAST (9364 sequences).xls
Blastn-NCBI
6383 were annotated with evalue less than 1.01E-04 
9336 annotated down to  8.80E+00 



Inquiry
running BLASTn nt
megablast nt
BLASTx nr


megablast 15min
LT_megablast.txt
5244 were annotated. ALL evalues less then 5E-04



Invocation command:
blastall -p blastn -i LT454combined_9364.fa -d "nt" -m 8 -v 1 -b 1 -a 2 -o blastall.txt
IOW 
BLASTn nt
LT_blastn_nt.txt
9347 were annotated up to evalue 10
6225 were annotated with evalue less than 1.01E-04 









BFX

mpiexec -np 4 -host localhost,node001,node002,node003 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 10 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/LT454combined_9364.fa  -d /common/clcbfxcell/databases/nr.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/LT454combined_9364_nr.txt 

*update 7am 0713- still running
LT454combined_9364_nr.txt

ALSO 
started SP blast on NCBI via CLC at 3PM 0712
*update 7am 0713- 91% 
9am DONE!

LT_blastxSP_CLC_9364.xls

3349 had hits evalue threshold 1E-1